DNA Binding Motif

Accessions: 4s04_EF (3D-footprint 20231221)
Names: DNA-binding transcriptional regulator BasR
Organisms: Klebsiella pneumoniae JM45
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Klebsiella pneumoniae PmrA in complex with PmrA box DNA
Length: 18
Consensus: TWAtnTTannnTAAGnAA
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 26 1 0 69 W
03 96 0 0 0 A
04 11 17 13 55 t
05 24 24 24 24 n
06 7 4 13 72 T
07 14 9 1 72 T
08 55 17 11 13 a
09 24 24 24 24 n
10 24 24 24 24 n
11 24 24 24 24 n
12 0 2 0 94 T
13 96 0 0 0 A
14 96 0 0 0 A
15 1 2 92 1 G
16 24 24 24 24 n
17 96 0 0 0 A
18 96 0 0 0 A
Binding TFs: 4s04_E / 4s04_F (Response regulator receiver domain, Transcriptional regulatory protein, C terminal)
Binding Sites: 4s04_G
4s04_H
Publications: Lou YC, Weng TH, Li YC, Kao YF, Lin WF, Peng HL, Chou SH, Hsiao CD, Chen C. Structure and dynamics of polymyxin-resistance-associated response regulator PmrA in complex with promoter DNA. Nat Commun : (2015). [Pubmed]

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