DNA Binding Motif
Accessions: | Fur (DBTBS 1.0) |
Names: | Fur |
Organisms: | Bacillus subtilis |
Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
Length: | 20 |
Consensus: | AwTGAkAATCATTATCAwtT |
Weblogo: | |
PSSM: | P0 A C G T 01 0.97 0 0 0.03 A 02 0.54 0 0.06 0.40 w 03 0.03 0 0 0.97 T 04 0 0.05 0.92 0.02 G 05 0.86 0.07 0.07 0 A 06 0.11 0 0.57 0.32 k 07 0.84 0 0.07 0.08 A 08 0.89 0.07 0 0.03 A 09 0.09 0 0 0.91 T 10 0.15 0.83 0 0.02 C 11 0.86 0.07 0.07 0 A 12 0 0.07 0.07 0.86 T 13 0 0.17 0 0.83 T 14 0.70 0.07 0 0.24 A 15 0 0 0.07 0.93 T 16 0 1 0 0 C 17 1 0 0 0 A 18 0.47 0.06 0 0.47 w 19 0.12 0.23 0 0.65 t 20 0.21 0 0.06 0.73 T |
Binding TFs: | Fur (Ferric uptake regulator family) |
Binding Sites: | dhbA_1 feuA_1 fhuD nasE ybbB ycgT yclN ydbN ydhU yfhC yfiZ_1 yfiZ_2 yfkM yfmC yhfQ ykuN_1 ykuN_2 yoaJ yuiI yusV_1 yusV_2 ywbL ywjA yxeB |
Publications: | Baichoo N, Wang T, Ye R, Helmann J.D. Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon. Molecular microbiology 45:1613-29 (2002). [Pubmed] Ollinger J, Song K.B, Antelmann H, Hecker M, Helmann J.D. Role of the Fur regulon in iron transport in Bacillus subtilis. Journal of bacteriology 188:3664-73 (2006). [Pubmed] |
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