DNA Binding Motif

Accessions: Fur (DBTBS 1.0)
Names: Fur
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Length: 20
Consensus: AwTGAkAATCATTATCAwtT
Weblogo:
PSSM: P0 A C G T
01 0.97 0 0 0.03 A
02 0.54 0 0.06 0.40 w
03 0.03 0 0 0.97 T
04 0 0.05 0.92 0.02 G
05 0.86 0.07 0.07 0 A
06 0.11 0 0.57 0.32 k
07 0.84 0 0.07 0.08 A
08 0.89 0.07 0 0.03 A
09 0.09 0 0 0.91 T
10 0.15 0.83 0 0.02 C
11 0.86 0.07 0.07 0 A
12 0 0.07 0.07 0.86 T
13 0 0.17 0 0.83 T
14 0.70 0.07 0 0.24 A
15 0 0 0.07 0.93 T
16 0 1 0 0 C
17 1 0 0 0 A
18 0.47 0.06 0 0.47 w
19 0.12 0.23 0 0.65 t
20 0.21 0 0.06 0.73 T
Binding TFs: Fur (Ferric uptake regulator family)
Binding Sites: dhbA_1
feuA_1
fhuD
nasE
ybbB
ycgT
yclN
ydbN
ydhU
yfhC
yfiZ_1
yfiZ_2
yfkM
yfmC
yhfQ
ykuN_1
ykuN_2
yoaJ
yuiI
yusV_1
yusV_2
ywbL
ywjA
yxeB
Publications: Baichoo N, Wang T, Ye R, Helmann J.D. Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon. Molecular microbiology 45:1613-29 (2002). [Pubmed]

Ollinger J, Song K.B, Antelmann H, Hecker M, Helmann J.D. Role of the Fur regulon in iron transport in Bacillus subtilis. Journal of bacteriology 188:3664-73 (2006). [Pubmed]

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