DNA Binding Motif

Accessions: M0425 (AthalianaCistrome v4_May2016)
Names: 3XHMGBOX1.ampDAP, T19595;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 15
Consensus: wCCaCCaCCrCCwCC
Weblogo:
PSSM: P0 A C G T
01 166 55 67 128 w
02 3 316 3 94 C
03 9 407 0 0 C
04 229 0 84 103 a
05 7 353 6 50 C
06 17 377 1 21 C
07 261 0 86 69 a
08 49 290 12 65 C
09 38 349 8 21 C
10 220 8 108 80 r
11 10 303 35 68 C
12 42 339 0 35 C
13 202 0 77 137 w
14 13 346 16 41 C
15 38 335 4 39 C
Binding TFs: T19595 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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