DNA Binding Motif

Accessions: 3mzh_AB (3D-footprint 20231221)
Names: PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY CRP/FNR-FAMILY)
Organisms: Mycobacterium tuberculosis, strain ATCC 25618 / H37Rv
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of cAMP receptor protein from mycobacterium tuberculosis in complex with cAMP and its DNA binding element
Length: 16
Consensus: TGTGAnnnnnGTCACG
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 0 0 96 0 G
03 0 0 0 96 T
04 0 0 96 0 G
05 96 0 0 0 A
06 24 24 24 24 n
07 24 24 24 24 n
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 9 7 73 7 G
12 7 7 9 73 T
13 0 96 0 0 C
14 96 0 0 0 A
15 7 73 7 9 C
16 7 7 75 7 G
Binding TFs: 3mzh_A / 3mzh_B (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 3mzh_C
3mzh_D

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