DNA Binding Motif
Accessions: | MA0485.1 (JASPAR 2024) |
Names: | Hoxc9 |
Organisms: | Mus musculus |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | ChIP-seq |
Length: | 13 |
Consensus: | rgCmATAAATCwy |
Weblogo: | |
PSSM: | P0 A C G T 01 235 110 401 139 r 02 112 171 536 66 g 03 88 605 40 152 C 04 224 468 1 192 m 05 661 3 205 16 A 06 0 9 0 876 T 07 745 84 35 21 A 08 881 0 0 4 A 09 879 6 0 0 A 10 18 0 0 867 T 11 48 715 5 117 C 12 567 72 6 240 w 13 141 329 160 255 y |
Type: | Heterodimer |
Binding TFs: | P09633 (Homeobox domain, Hox9 activation region ) P09633 |
Binding Sites: | MA0485.1.1 MA0485.1.10 MA0485.1.11 MA0485.1.12 MA0485.1.13 MA0485.1.14 MA0485.1.15 MA0485.1.16 MA0485.1.17 MA0485.1.18 MA0485.1.19 MA0485.1.2 MA0485.1.20 MA0485.1.3 MA0485.1.4 MA0485.1.5 MA0485.1.6 MA0485.1.7 MA0485.1.8 MA0485.1.9 |
Publications: | Shen W.F, Rozenfeld S, Lawrence H.J, Largman C. The Abd-B-like Hox homeodomain proteins can be subdivided by the ability to form complexes with Pbx1a on a novel DNA target. The Journal of biological chemistry 272:8198-206 (1997). [Pubmed] |
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