DNA Binding Motif

Accessions: MA0485.1 (JASPAR 2024)
Names: Hoxc9
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 13
Consensus: rgCmATAAATCwy
Weblogo:
PSSM: P0 A C G T
01 235 110 401 139 r
02 112 171 536 66 g
03 88 605 40 152 C
04 224 468 1 192 m
05 661 3 205 16 A
06 0 9 0 876 T
07 745 84 35 21 A
08 881 0 0 4 A
09 879 6 0 0 A
10 18 0 0 867 T
11 48 715 5 117 C
12 567 72 6 240 w
13 141 329 160 255 y
Type: Heterodimer
Binding TFs: P09633 (Homeobox domain, Hox9 activation region )
P09633
Binding Sites: MA0485.1.1
MA0485.1.10
MA0485.1.11
MA0485.1.12
MA0485.1.13
MA0485.1.14
MA0485.1.15
MA0485.1.16
MA0485.1.17
MA0485.1.18
MA0485.1.19
MA0485.1.2
MA0485.1.20
MA0485.1.3
MA0485.1.4
MA0485.1.5
MA0485.1.6
MA0485.1.7
MA0485.1.8
MA0485.1.9
Publications: Shen W.F, Rozenfeld S, Lawrence H.J, Largman C. The Abd-B-like Hox homeodomain proteins can be subdivided by the ability to form complexes with Pbx1a on a novel DNA target. The Journal of biological chemistry 272:8198-206 (1997). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.