DNA Binding Motif

Accessions: MA1359.1 (JASPAR 2018), M0162 (AthalianaCistrome v4_May2016)
Names: bHLH31, bHLH31.DAP, T06238;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1, AthalianaCistrome v4_May2016 2
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 21
Consensus: swkgwgrCACGTGbswwwcwc
Weblogo:
PSSM: P0 A C G T
01 138 179 215 63 s
02 263 44 54 234 w
03 97 122 204 172 k
04 136 100 230 129 g
05 164 116 83 232 w
06 126 131 231 107 g
07 153 142 194 106 r
08 0 595 0 0 C
09 595 0 0 0 A
10 0 581 0 14 C
11 48 0 547 0 G
12 0 0 0 595 T
13 0 0 595 0 G
14 83 167 180 165 b
15 113 182 163 137 s
16 190 141 94 170 w
17 187 121 97 190 w
18 155 95 87 258 w
19 101 257 146 91 c
20 251 101 83 160 w
21 98 259 115 123 c
Binding TFs: T06238 / Q0JXE7 (Helix-loop-helix DNA-binding domain)
Binding Sites: MA1359.1.1
MA1359.1.10
MA1359.1.11
MA1359.1.12
MA1359.1.13
MA1359.1.14
MA1359.1.18 / MA1359.1.15
MA1359.1.16
MA1359.1.17
MA1359.1.19
MA1359.1.2
MA1359.1.20
MA1359.1.3
MA1359.1.4
MA1359.1.5
MA1359.1.6
MA1359.1.7
MA1359.1.8
MA1359.1.9
Publications: Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.