DNA Binding Motif

Accessions: M0002_1.02 (CISBP 1.02)
Names: AFT1, T000387_1.02
Organisms: Saccharomyces cerevisiae
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 11
Consensus: atTGCACCCsg
Weblogo:
PSSM: P0 A C G T
01 0.3219 0.2260 0.2260 0.2260 a
02 0.1917 0.0997 0.1912 0.5175 t
03 0.0226 0.1111 0.0226 0.8437 T
04 0.0002 0.0876 0.8223 0.0899 G
05 0.0002 0.9995 0.0002 0.0002 C
06 0.8223 0.1773 0.0002 0.0002 A
07 0.0002 0.9995 0.0002 0.0002 C
08 0.0002 0.9995 0.0002 0.0002 C
09 0.0242 0.9275 0.0242 0.0242 C
10 0.1505 0.2567 0.4423 0.1505 s
11 0.2276 0.2276 0.3172 0.2276 g
Binding TFs: T000387_1.02 (Transcription factor AFT)
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]

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