DNA Binding Motif

Accessions: 3do7_AB (3D-footprint 20231221)
Names: Avian reticuloendotheliosis viral (V-rel) oncogene related B
Organisms: Mus musculus, Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: X-ray structure of a NF-kB p52/RelB/DNA complex
Length: 9
Consensus: GGGAnTTCC
Weblogo:
PSSM: P0 A C G T
01 0 0 96 0 G
02 0 0 96 0 G
03 0 0 96 0 G
04 69 9 9 9 A
05 24 24 24 24 n
06 11 9 9 67 T
07 11 9 9 67 T
08 0 96 0 0 C
09 0 96 0 0 C
Type: Heterodimer
Binding TFs: 3do7_A (Rel homology domain (RHD))
3do7_B (Rel homology domain (RHD))
Binding Sites: 3do7_C
3do7_D

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