DNA Binding Motif

Accessions: MA1355.1 (JASPAR 2024), M0604 (AthalianaCistrome v4_May2016)
Names: TBP3, TRB2, T25713;, TBP3.DAP
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 19
Consensus: awwwhtwwrCCCTAAwtwy
Weblogo:
PSSM: P0 A C G T
01 266 105 68 133 a
02 277 76 68 151 w
03 262 91 58 161 w
04 237 114 47 174 w
05 171 148 43 210 h
06 119 80 76 297 t
07 302 9 86 175 w
08 378 3 1 190 w
09 335 0 237 0 r
10 42 530 0 0 C
11 0 572 0 0 C
12 0 572 0 0 C
13 0 0 0 572 T
14 572 0 0 0 A
15 483 0 87 2 A
16 191 87 12 282 w
17 95 117 25 335 t
18 144 137 59 232 w
19 140 148 88 196 y
Type: Heterodimer
Binding TFs: T25713 (Myb-like DNA-binding domain, linker histone H1 and H5 family, Myb-like DNA-binding domain)
Q9JFW5
Q9JFW5
Binding Sites: MA1355.1.1
MA1355.1.10
MA1355.1.11
MA1355.1.12
MA1355.1.13
MA1355.1.14
MA1355.1.15
MA1355.1.16
MA1355.1.17
MA1355.1.18
MA1355.1.19
MA1355.1.2
MA1355.1.20
MA1355.1.3
MA1355.1.4
MA1355.1.5
MA1355.1.6
MA1355.1.7
MA1355.1.8
MA1355.1.9
Publications: Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.