DNA Binding Motif

Accessions: M0031_1.02 (CISBP 1.02)
Names: ATCBF3, T000667_1.02
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 10
Consensus: tatGTCGGyr
Weblogo:
PSSM: P0 A C G T
01 0.2249 0.2208 0.2457 0.3086 t
02 0.5113 0.1382 0.1676 0.1830 a
03 0.1287 0.2107 0.1387 0.5219 t
04 0.0319 0.0030 0.9580 0.0070 G
05 0.0274 0.0111 0.0020 0.9595 T
06 0.0107 0.9593 0.0000 0.0301 C
07 0.0679 0.0037 0.8884 0.0400 G
08 0.0902 0.0001 0.8936 0.0161 G
09 0.0157 0.5334 0.0145 0.4365 y
10 0.3712 0.2079 0.2666 0.1543 r
Binding TFs: T000667_1.02 (AP2 domain)
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

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