DNA Binding Motif

						

			
Accessions: MA1030.1 (JASPAR 2024)

			
Names: P0510F09.23
Organisms: Oryza sativa Japonica Group
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 10
Consensus: wrmCCTArhy
Weblogo: 
PSSM: P0      A      C      G      T
01    416    113     60    411      w
02    535     24    369     72      r
03    416    562      7     15      m
04     26    962      1     11      C
05     41    928     27      4      C
06     10      1      0    989      T
07    832     32     83     54      A
08    373    132    389    106      r
09    266    258    226    250      h
10    241    256    220    283      y
Type: Heterodimer
Binding TFs: Q5N9C9 (linker histone H1 and H5 family)
Q5N9C9
			
Publications: Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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