DNA Binding Motif

Accessions: MA0265.1 (JASPAR 2018)
Names: ABF1
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2018 1
1 [Pubmed]
Notes: PBM, CSA and/or DIP-chip
Length: 16
Consensus: yCGTakrwartGAyaw
Weblogo:
PSSM: P0 A C G T
01 11 41 4 44 y
02 0 99 0 1 C
03 0 0 99 0 G
04 0 0 0 99 T
05 41 17 22 20 a
06 22 24 26 28 k
07 39 16 28 17 r
08 34 18 20 28 w
09 40 21 24 15 a
10 41 0 57 0 r
11 12 25 9 55 t
12 0 0 81 19 G
13 92 8 0 0 A
14 0 45 9 46 y
15 37 22 18 23 a
16 34 18 14 34 w
Binding TFs: P14164 (BAF1 / ABF1 chromatin reorganising factor)
Publications: Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed]

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