DNA Binding Motif

Accessions: 4u0y_B (3D-footprint 20231221)
Names: HTH-type transcriptional repressor YvoA
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the DNA-binding domains of YvoA in complex with palindromic operator DNA
Length: 7
Consensus: TGGyaTA
Weblogo:
PSSM: P0 A C G T
01 1 0 22 73 T
02 0 0 96 0 G
03 0 0 96 0 G
04 4 41 1 50 y
05 39 22 22 13 a
06 4 2 4 86 T
07 96 0 0 0 A
Binding TFs: 4u0y_B (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain)
Binding Sites: 4u0y_E / 4u0y_F
Publications: Fillenberg S.B, Grau F.C, Seidel G, Muller Y.A. Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR. Nucleic acids research 43:1283-96 (2015). [Pubmed]

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