DNA Binding Motif

						

			
Accessions: MA0502.1 (JASPAR 2024)

			
Names: NFYB
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 15
Consensus: rmmysrrCCAATCAG
Weblogo: 
PSSM: P0      A      C      G      T
01   2965   1580   1984    491      r
02   2816   1759   1078   1367      m
03   2821   1760   1176   1263      m
04    655   2228   1089   3048      y
05    674   2076   2707   1563      s
06   2832   1091   2978    119      r
07   3509    139   2921    451      r
08      0   7020      0      0      C
09      0   7020      0      0      C
10   7020      0      0      0      A
11   7003      0     17      0      A
12      0      0      0   7020      T
13    413   4780   1709    118      C
14   5454     97   1457     12      A
15    725    943   5136    216      G
Type: Heterodimer
Binding TFs: P25208 (Core histone H2A/H2B/H3/H4, Histone-like transcription factor (CBF/NF-Y) and archaeal histone)
P25208
Binding Sites: MA0502.1.1
MA0502.1.10
MA0502.1.11
MA0502.1.12
MA0502.1.13
MA0502.1.14
MA0502.1.15
MA0502.1.16
MA0502.1.17
MA0502.1.18
MA0502.1.19
MA0502.1.2
MA0502.1.20
MA0502.1.3
MA0502.1.4
MA0502.1.5
MA0502.1.6
MA0502.1.7
MA0502.1.8
MA0502.1.9
			
Publications: Bi W, Wu L, Coustry F, de Crombrugghe B, Maity S.N. DNA binding specificity of the CCAAT-binding factor CBF/NF-Y. The Journal of biological chemistry 272:26562-72 (1997). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.