DNA Binding Motif

Accessions: UP00517A_2 (UniPROBE 20160601)
Names: A.nid Fox3, ANID_04985
Organisms: Emericella nidulans
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: ycwkyvcmcamwbakacyttky
Weblogo:
PSSM: P0 A C G T
01 0.19 0.38 0.14 0.29 y
02 0.17 0.47 0.22 0.13 c
03 0.27 0.23 0.18 0.32 w
04 0.15 0.14 0.34 0.36 k
05 0.08 0.51 0.15 0.26 y
06 0.27 0.34 0.26 0.13 v
07 0.19 0.55 0.14 0.11 c
08 0.48 0.31 0.09 0.12 m
09 0.16 0.54 0.23 0.07 c
10 0.57 0.18 0.04 0.22 a
11 0.26 0.46 0.19 0.09 m
12 0.51 0.12 0.11 0.26 w
13 0.08 0.30 0.30 0.32 b
14 0.59 0.17 0.16 0.08 a
15 0.15 0.14 0.36 0.35 k
16 0.62 0.14 0.19 0.05 a
17 0.11 0.57 0.09 0.22 c
18 0.21 0.37 0.11 0.31 y
19 0.16 0.05 0.12 0.67 t
20 0.14 0.11 0.10 0.65 t
21 0.05 0.12 0.28 0.55 k
22 0.07 0.45 0.19 0.29 y
Binding TFs: UP00517A (Fork head domain)
Binding Sites: AACGCACA
ACGCACAA
ACGCACAC
ACGCACAG
ACTGTGCG
AGTGTGCG
ATCGCACA
ATTGTGCG
CCCACAAA
CCCACAAC
CCGCACAA
CGCACAAA
CGCACAAC
CGCACACA
CGCACAGA
CTGTGCGA
GCGCACAA
TACGCACA
TCGCACAA
TGTGCGAA
Publications: Nakagawa S, Gisselbrecht SS, Rogers JM, Hartl DL, Bulyk ML. DNA-binding specificity changes in the evolution of forkhead transcription factors. Proc Natl Acad Sci U S A 110:12349-54 (2013). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.