DNA Binding Motif

						

			
Accessions: AraC (RegulonDB 7.5)

			
Names: AraC
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 19
Consensus: TRTGkaytwhyykrCTvyk
Weblogo: 
PSSM: P0      A      C      G      T
01      0      2      1     12      T
02     11      0      4      0      R
03      1      0      3     11      T
04      2      0     11      2      G
05      0      3      8      4      k
06     10      3      1      1      a
07      1      8      0      6      y
08      3      0      3      9      t
09      8      2      0      5      w
10      4      4      0      7      h
11      2      8      0      5      y
12      3      4      1      7      y
13      1      3      4      7      k
14      4      0      8      3      r
15      0     13      0      2      C
16      2      1      1     11      T
17      4      4      7      0      v
18      3      4      0      8      y
19      3      0      5      7      k
Binding TFs: ECK120004526 (Bacterial regulatory helix-turn-helix proteins, AraC family, AraC-like ligand binding domain, Helix-turn-helix domain)
Binding Sites: ECK120012320
ECK120012323
ECK120012328
ECK120012331
ECK120012333
ECK120012335
ECK120012603
ECK120012913
ECK120012915
ECK120012990
ECK120012992
ECK120013555
ECK120015742
ECK125108641
ECK125108643
			
	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.