DNA Binding Motif

Accessions: 3fhz_AD (3D-footprint 20231221)
Names: Arginine repressor
Organisms: Mycobacterium tuberculosis, strain ATCC 25618 / H37Rv
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and co-repressor, L-arginine
Length: 14
Consensus: TGCATAnngATTMA
Weblogo:
PSSM: P0 A C G T
01 13 6 10 67 T
02 0 0 96 0 G
03 0 96 0 0 C
04 85 5 3 3 A
05 0 0 0 96 T
06 92 3 0 1 A
07 24 24 24 24 n
08 24 24 24 24 n
09 10 15 61 10 g
10 96 0 0 0 A
11 3 6 6 81 T
12 3 6 13 74 T
13 72 24 0 0 M
14 96 0 0 0 A
Type: Heterodimer
Binding TFs: 3fhz_A (Arginine repressor, DNA binding domain, Arginine repressor, C-terminal domain)
3fhz_D (Arginine repressor, DNA binding domain, Arginine repressor, C-terminal domain)
Binding Sites: 3fhz_K
3fhz_L
Publications: Cherney L.T, Cherney M.M, Garen C.R, James M.N. The structure of the arginine repressor from Mycobacterium tuberculosis bound with its DNA operator and Co-repressor, L-arginine. Journal of molecular biology 388:85-97 (2009). [Pubmed]

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