DNA Binding Motif

						

			
Accessions: MA1196.1 (JASPAR 2024), M0610 (AthalianaCistrome v4_May2016)

			
Names: At5g05790, At5g05790.DAP, T24892;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: awycTTATCytcwtm
Weblogo: 
PSSM: P0      A      C      G      T
01    319     79     59    130      a
02    295      2     33    257      w
03     16    340     40    191      y
04    139    348     67     33      c
05      0     22      0    565      T
06      7    112     15    453      T
07    587      0      0      0      A
08      0      0      0    587      T
09      0    587      0      0      C
10    133    164     15    275      y
11    119     70     57    341      t
12    131    200    116    140      c
13    351      0     26    210      w
14     92    119     37    339      t
15    150    256     41    140      m
Binding TFs: T24892 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Binding Sites: MA1196.1.1
MA1196.1.10
MA1196.1.11
MA1196.1.12
MA1196.1.13
MA1196.1.14
MA1196.1.15
MA1196.1.16
MA1196.1.17
MA1196.1.18
MA1196.1.19
MA1196.1.2
MA1196.1.20
MA1196.1.3
MA1196.1.4
MA1196.1.5
MA1196.1.6
MA1196.1.7
MA1196.1.8
MA1196.1.9
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.