DNA Binding Motif

Accessions: 4u0y_ABCD (3D-footprint 20231221)
Names: HTH-type transcriptional repressor YvoA
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the DNA-binding domains of YvoA in complex with palindromic operator DNA
Length: 14
Consensus: GTGGycTAgaCCAC
Weblogo:
PSSM: P0 A C G T
01 0 0 96 0 G
02 0 0 0 96 T
03 0 0 96 0 G
04 0 0 96 0 G
05 5 34 2 55 y
06 14 60 8 14 c
07 0 0 0 96 T
08 96 0 0 0 A
09 19 17 52 8 g
10 58 14 16 8 a
11 0 96 0 0 C
12 0 96 0 0 C
13 96 0 0 0 A
14 6 90 0 0 C
Type: Heterodimer
Binding TFs: 4u0y_A / 4u0y_B / 4u0y_C (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain)
4u0y_D (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain)
Binding Sites: 4u0y_E / 4u0y_F
Publications: Fillenberg S.B, Grau F.C, Seidel G, Muller Y.A. Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR. Nucleic acids research 43:1283-96 (2015). [Pubmed]

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