DNA Binding Motif

						

			
Accessions: AhrC (DBTBS 1.0)

			
Names: AhrC
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Length: 12
Consensus: ATYTTTATTCAK
Weblogo: 
PSSM: P0      A      C      G      T
01   0.83      0      0   0.17      A
02   0.17      0      0   0.83      T
03      0   0.30      0   0.70      Y
04      0      0      0      1      T
05   0.17      0      0   0.83      T
06      0      0      0      1      T
07      1      0      0      0      A
08      0      0      0      1      T
09   0.17      0      0   0.83      T
10   0.12   0.88      0      0      C
11      1      0      0      0      A
12      0      0   0.30   0.70      K
Binding TFs: AhrC (Arginine repressor, DNA binding domain, Arginine repressor, C-terminal domain)
Binding Sites: argC_1
argC_2
argC_3
rocA_1
rocD_1
			
Publications: Czaplewski L.G, North A.K, Smith M.C, Baumberg S, Stockley P.G. Purification and initial characterization of AhrC: the regulator of arginine metabolism genes in Bacillus subtilis. Molecular microbiology 6:267-75 (1992). [Pubmed]


Smith M.C, Mountain A, Baumberg S. Sequence analysis of the Bacillus subtilis argC promoter region. Gene 49:53-60 (1986). [Pubmed]


Klingel U, Miller C.M, North A.K, Stockley P.G, Baumberg S. A binding site for activation by the Bacillus subtilis AhrC protein, a repressor/activator of arginine metabolism. Molecular & general genetics : MGG 248:329-40 (1995). [Pubmed]


Miller C.M, Baumberg S, Stockley P.G. Operator interactions by the Bacillus subtilis arginine repressor/activator, AhrC: novel positioning and DNA-mediated assembly of a transcriptional activator at catabolic sites. Molecular microbiology 26:37-48 (1997). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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