DNA Binding Motif

						

			
Accessions: 1zme_D (3D-footprint 20231221)

			
Names: PROLINE UTILIZATION TRANSCRIPTION ACTIVATOR
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF PUT3/DNA COMPLEX
Length: 9
Consensus: CcannnCCG
Weblogo: 
PSSM: P0      A      C      G      T
01      0     96      0      0      C
02     13     57     13     13      c
03     54     16     13     13      a
04     24     24     24     24      n
05     24     24     24     24      n
06     24     24     24     24      n
07      0     96      0      0      C
08      0     96      0      0      C
09      0      0     96      0      G
Binding TFs: 1zme_D (Fungal Zn(2)-Cys(6) binuclear cluster domain)
Binding Sites: 1zme_A
1zme_B
			
Publications: Swaminathan K, Flynn P, Reece R.J, Marmorstein R. Crystal structure of a PUT3-DNA complex reveals a novel mechanism for DNA recognition by a protein containing a Zn2Cys6 binuclear cluster. Nature structural biology 4:751-9 (1997). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.