DNA Binding Motif

						

			
Accessions: MA1378.1 (JASPAR 2024), M0124 (AthalianaCistrome v4_May2016)

			
Names: AIL6, PLT3, PLT3.DAP, T27083;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: ymTcGrrAwyCGtGc
Weblogo: 
PSSM: P0      A      C      G      T
01     11    345     16    159      y
02    135    351     13     32      m
03      2     24      3    502      T
04     33    357     33    108      c
05      2      7    517      5      G
06    222      0    278     31      r
07    167      7    238    119      r
08    368     16     46    101      A
09    223     24     41    243      w
10     96    153     97    185      y
11     37    372     17    105      C
12     23     11    473     24      G
13     83     78     59    311      t
14     98     14    386     33      G
15    131    260     24    116      c
Type: Heterodimer
Binding TFs: T27083 (AP2 domain)
Q52QU2
Binding Sites: MA1378.1.1
MA1378.1.10
MA1378.1.11
MA1378.1.12
MA1378.1.13
MA1378.1.14
MA1378.1.15
MA1378.1.16
MA1378.1.17
MA1378.1.18
MA1378.1.19
MA1378.1.2
MA1378.1.20
MA1378.1.3
MA1378.1.4
MA1378.1.5
MA1378.1.6
MA1378.1.7
MA1378.1.8
MA1378.1.9
			
Publications: Nole-Wilson S., Krizek B. A. DNA binding properties of the Arabidopsis floral development protein AINTEGUMENTA. Nucleic Acids Res. 28:4076-4082 (2000). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.