DNA Binding Motif

						

			
Accessions: MA0990.1 (JASPAR 2024)

			
Names: EDT1, HDG11
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 10
Consensus: ymwTwAATGc
Weblogo: 
PSSM: P0      A      C      G      T
01    209    392    115    285      y
02    582    256     67     94      m
03    495     27     70    409      w
04     57     11      9    923      T
05    315     55     33    598      w
06    922     28     43      7      A
07    833     39     23    105      A
08    135     26      1    839      T
09     81     25    756    137      G
10    220    504     49    227      c
Type: Heterodimer
Binding TFs: Q9FX31 (Homeobox domain, START domain)
Q9FX31
			
Publications: Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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