DNA Binding Motif

						

			
Accessions: MA1025.1 (JASPAR 2024)

			
Names: HBI1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 12
Consensus: cgkGCACGTGct
Weblogo: 
PSSM: P0      A      C      G      T
01    229    313    229    229      c
02    229    229    313    229      g
03    132    240    315    313      k
04     24    106    762    108      G
05      0   1000      0      0      C
06   1000      0      0      0      A
07      0    904      0     95      C
08      0      0   1000      0      G
09     21     21     21    936      T
10     21     21    936     21      G
11    202    485    195    118      c
12    226    226    226    322      t
Type: Heterodimer
Binding TFs: Q9ZPW3 (Helix-loop-helix DNA-binding domain)
Q9ZPW3
			
Publications: Fan M, Bai MY, Kim JG, Wang T, Oh E, Chen L, Park CH, Son SH, Kim SK, Mudgett MB, Wang ZY. The bHLH transcription factor HBI1 mediates the trade-off between growth and pathogen-associated molecular pattern-triggered immunity in Arabidopsis. Plant Cell 26:828-41 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.