DNA Binding Motif

Accessions: 3wgi_D (3D-footprint 20231221)
Names: Redox-sensing transcriptional repressor rex
Organisms: Thermoanaerobacter ethanolicus JW 200
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of RSP in complex with beta-NAD+ and operator DNA
Length: 7
Consensus: TTGTTAA
Weblogo:
PSSM: P0 A C G T
01 9 11 9 67 T
02 0 0 0 96 T
03 0 0 96 0 G
04 0 0 0 96 T
05 11 9 9 67 T
06 96 0 0 0 A
07 69 9 9 9 A
Binding TFs: 3wgi_D (CoA binding domain, Putative DNA-binding protein N-terminus)
Binding Sites: 3wgi_G / 3wgi_H
Publications: Zheng Y, Ko TP, Sun H, Huang CH, Pei J, Qiu R, Wang AH, Wiegel J, Shao W, Guo RT. Distinct structural features of Rex-family repressors to sense redox levels in anaerobes and aerobes. J Struct Biol 188:195-204 (2014). [Pubmed]

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