DNA Binding Motif

						

			
Accessions: 1dp7_P (3D-footprint 20231221)

			
Names: MHC CLASS II TRANSCRIPTION FACTOR HRFX1
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE
Length: 9
Consensus: aCcnGGnna
Weblogo: 
PSSM: P0      A      C      G      T
01     38     19     19     20      a
02      9     67     11      9      C
03     21     33     21     21      c
04     24     24     24     24      n
05      0      0     96      0      G
06      0      0     96      0      G
07     24     24     24     24      n
08     24     24     24     24      n
09     52     14     14     16      a
Binding TFs: 1dp7_P (RFX DNA-binding domain)
Binding Sites: 1dp7_D
			
Publications: Gajiwala K. S., Chen H., Cornille F., Roques B. P., Reith W., Mach B., Burley S. K. Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding.. Nature 403:916-921 (2000). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.