DNA Binding Motif

Accessions: 3clc_B (3D-footprint 20231221)
Names: Regulatory protein
Organisms: Enterobacter sp. RFL1396
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of the Restriction-Modification Controller Protein C.Esp1396I Tetramer in Complex with its Natural 35 Base-Pair Operator
Length: 5
Consensus: CGgac
Weblogo:
PSSM: P0 A C G T
01 0 96 0 0 C
02 4 7 81 4 G
03 12 12 60 12 g
04 33 21 21 21 a
05 14 52 14 16 c
Binding TFs: 3clc_B (Helix-turn-helix, Helix-turn-helix domain)
Binding Sites: 3clc_E
3clc_F
Publications: McGeehan J.E, Streeter S.D, Thresh S.J, Ball N, Ravelli R.B, Kneale G.G. Structural analysis of the genetic switch that regulates the expression of restriction-modification genes. Nucleic acids research 36:4778-87 (2008). [Pubmed]

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