DNA Binding Motif

Accessions: 1akh_A (3D-footprint 20231221)
Names: PROTEIN (MATING-TYPE PROTEIN A-1)
Organisms: Saccharomyces cerevisiae
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: MAT A1/ALPHA2/DNA TERNARY COMPLEX
Length: 7
Consensus: TnTnTCA
Weblogo:
PSSM: P0 A C G T
01 9 9 9 69 T
02 24 24 24 24 n
03 9 9 11 67 T
04 24 24 24 24 n
05 0 0 0 96 T
06 0 96 0 0 C
07 67 11 9 9 A
Binding TFs: 1akh_A (Homeobox domain, Homeobox KN domain)
Binding Sites: 1akh_C
1akh_D
Publications: Li T, Jin Y, Vershon A.K, Wolberger C. Crystal structure of the MATa1/MATalpha2 homeodomain heterodimer in complex with DNA containing an A-tract. Nucleic acids research 26:5707-18 (1998). [Pubmed]

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