DNA Binding Motif

Accessions: 6mrj_D (3D-footprint 2022-04-03)
Names: Nickel-responsive regulator
Organisms: Helicobacter pylori, Helicobacter pylori (strain ATCC 700392 / 26695)
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of H.pylori NikR in complex with DNA
Length: 7
Consensus: TTAnTAT
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 7 7 9 73 T
03 73 9 7 7 A
04 24 24 24 24 n
05 9 7 7 73 T
06 96 0 0 0 A
07 9 7 7 73 T
Binding TFs: 6mrj_D (Ribbon-helix-helix protein, copG family, NikR C terminal nickel binding domain)
Binding Sites: 6mrj_L
6mrj_M

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