DNA Binding Motif

Accessions: 5und_A (3D-footprint 2022-04-03)
Names: Transcriptional repressor CTCF
Organisms: Homo sapiens
Libraries: 3D-footprint 2022-04-03 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of CTCF(ZnF 4-10) With 28-mer DNA
Length: 13
Consensus: cGCCCCCTGCTGg
Weblogo:
PSSM: P0 A C G T
01 8 64 16 8 c
02 0 0 96 0 G
03 0 96 0 0 C
04 0 96 0 0 C
05 0 96 0 0 C
06 0 96 0 0 C
07 0 96 0 0 C
08 0 0 0 96 T
09 8 0 88 0 G
10 8 72 8 8 C
11 0 0 0 96 T
12 0 0 96 0 G
13 0 16 64 16 g
Binding TFs: 5und_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc-finger domain)
Binding Sites: 5und_C
5und_D
5und_E
5und_F
Publications: Hashimoto H, Wang D, Horton JR, Zhang X, Corces VG, Cheng X. Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol Cell 66:711-720 (2017). [Pubmed]

Disclaimer

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research.