DNA Binding Motif

						

			
Accessions: MA1395.1 (JASPAR 2024), M0493 (AthalianaCistrome v4_May2016)

			
Names: MYB77, MYB77.DAP, T13496;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: ydrwwwwdaCsGTTA
Weblogo: 
PSSM: P0      A      C      G      T
01    130    199     96    175      y
02    150     97    195    158      d
03    150     58    248    144      r
04    154     87    107    252      w
05    163     83    116    238      w
06    244     33    144    179      w
07    230     56     28    286      w
08    208      0    211    181      d
09    387     14    104     95      a
10      3    572      0     25      C
11    144    168    288      0      s
12      0      0    600      0      G
13      0      0      0    600      T
14      0      0      0    600      T
15    433      0    119     48      A
Binding TFs: T13496 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Binding Sites: MA1395.1.1
MA1395.1.10
MA1395.1.11
MA1395.1.12
MA1395.1.13
MA1395.1.14
MA1395.1.15
MA1395.1.16
MA1395.1.17
MA1395.1.18
MA1395.1.19
MA1395.1.2
MA1395.1.20
MA1395.1.3
MA1395.1.4
MA1395.1.5
MA1395.1.6
MA1395.1.7
MA1395.1.8
MA1395.1.9
			
Publications: Rosanova A, Colliva A, Osella M, Caselle M. Modelling the evolution of transcription factor binding preferences in complex eukaryotes. Sci Rep 7:7596 (2017). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.