DNA Binding Motif

Accessions: MA0146.1 (JASPAR 2024)
Names: Zfx
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 14
Consensus: sssgsCbvGGCCTs
Weblogo:
PSSM: P0 A C G T
01 50 177 179 70 s
02 60 170 172 75 s
03 91 151 199 37 s
04 72 49 298 60 g
05 10 297 144 30 s
06 6 362 2 111 C
07 30 125 182 144 b
08 191 154 121 15 v
09 9 2 469 1 G
10 0 3 477 1 G
11 1 480 0 0 C
12 0 480 0 1 C
13 0 2 0 479 T
14 84 122 219 56 s
Type: Heterodimer
Binding TFs: P17012 (Zinc finger, C2H2 type, Zfx / Zfy transcription activation region, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc-finger domain)
P17012
Binding Sites: MA0146.1.1
MA0146.1.10
MA0146.1.11
MA0146.1.12
MA0146.1.13
MA0146.1.14
MA0146.1.15
MA0146.1.16
MA0146.1.17
MA0146.1.18
MA0146.1.19
MA0146.1.2
MA0146.1.20
MA0146.1.3
MA0146.1.4
MA0146.1.5
MA0146.1.6
MA0146.1.7
MA0146.1.8
MA0146.1.9
Publications: Chen X, Xu H, Yuan P, Fang F, Huss M, Vega V.B, Wong E, Orlov Y.L, Zhang W, Jiang J, Loh Y.H, Yeo H.C, Yeo Z.X, Narang V, Govindarajan K.R, Leong B, Shahab A, Ruan Y, Bourque G, Sung W.K, Clarke N.D, Wei C.L, Ng H.H. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133:1106-17 (2008). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.