DNA Binding Motif

Accessions: M1227_1.02 (CISBP 1.02)
Names: amel4_ncbi_hmm42917, T104707_1.02
Organisms: Apis mellifera
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Length: 10
Consensus: hTAwTwAtrc
Weblogo:
PSSM: P0 A C G T
01 0.2773 0.2816 0.1805 0.2606 h
02 0.0169 0.0830 0.0169 0.8831 T
03 0.8051 0.0001 0.0676 0.1273 A
04 0.5884 0.0676 0.0001 0.3439 w
05 0.1298 0.0001 0.1106 0.7596 T
06 0.2984 0.1106 0.0001 0.5910 w
07 0.9998 0.0001 0.0001 0.0001 A
08 0.1733 0.0932 0.1943 0.5392 t
09 0.3783 0.1627 0.2963 0.1627 r
10 0.2331 0.3006 0.2331 0.2331 c
Binding TFs: T104707_1.02 (Pou domain - N-terminal to homeobox domain, Homeobox domain)
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

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