DNA Binding Motif

						

			
Accessions: Alx1_DBD_2 (HumanTF 1.0)

			
Names: Alx1
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 13
Consensus: yTAATywaATTAa
Weblogo: 
PSSM: P0      A      C      G      T
01   8963  11812   5376   9703      y
02   4597   2047    405  35854      T
03  35854    292   1532   2296      A
04  35854     44     68     29      A
05   1685   7124    811  35854      T
06   1010  13901   2678  21953      y
07  11725   7577   5361  11191      w
08  27619   4067   8235    867      a
09  35854   1222   2923    930      A
10     23    119     28  35854      T
11   3263   2390    248  35854      T
12  35854    440   1041   2819      A
13  12818   8789   7012   7236      a
Binding TFs: Alx1_DBD (Homeobox domain, Homeobox KN domain)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.