DNA Binding Motif

Accessions: 4x4g_ABCD (3D-footprint 20231221)
Names: Regulatory protein
Organisms: Enterobacter sp. RFL1396
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 26.8 MGy
Length: 33
Consensus: TGTnGACnnnnTnCACRCnGAnnnnnAGTCACA
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 0 0 96 0 G
03 0 5 1 90 T
04 24 24 24 24 n
05 0 0 96 0 G
06 88 4 1 3 A
07 1 71 9 15 C
08 24 24 24 24 n
09 24 24 24 24 n
10 24 24 24 24 n
11 24 24 24 24 n
12 1 0 1 94 T
13 24 24 24 24 n
14 0 96 0 0 C
15 88 4 1 3 A
16 0 82 14 0 C
17 26 0 69 1 R
18 3 91 1 1 C
19 24 24 24 24 n
20 0 0 96 0 G
21 78 3 8 7 A
22 24 24 24 24 n
23 24 24 24 24 n
24 24 24 24 24 n
25 24 24 24 24 n
26 24 24 24 24 n
27 90 1 4 1 A
28 0 0 96 0 G
29 0 0 0 96 T
30 6 80 7 3 C
31 88 4 1 3 A
32 0 96 0 0 C
33 96 0 0 0 A
Type: Heterodimer
Binding TFs: 4x4g_A / 4x4g_D (Helix-turn-helix, Helix-turn-helix domain)
4x4g_B / 4x4g_C (Helix-turn-helix, Helix-turn-helix domain)
Binding Sites: 4x4g_E
4x4g_F
Publications: Bury C, Garman EF, Ginn HM, Ravelli RB, Carmichael I, Kneale G, McGeehan JE. Radiation damage to nucleoprotein complexes in macromolecular crystallography. J Synchrotron Radiat 22:213-24 (2015). [Pubmed]

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