DNA Binding Motif

						

			
Accessions: CN0178.1 (JASPAR 2024)

			
Names: LM178
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 20
Consensus: wgawtTCATTTTCCAAAGCa
Weblogo: 
PSSM: P0      A      C      G      T
01     62     29     24    108      w
02     32     50     93     48      g
03    130     34     27     32      a
04    101     34     19     69      w
05     25     22     25    151      t
06     28     15     19    161      T
07      3    208      9      3      C
08    210      4      0      9      A
09      7      5      9    202      T
10      4      4      3    212      T
11      6      5      0    212      T
12      2     13      4    204      T
13     10    178     20     15      C
14     13    188      3     19      C
15    208      6      2      7      A
16    192     11     12      8      A
17    211      4      7      1      A
18     17      7    176     23      G
19     15    173     20     15      C
20    151     25      2     45      a
			
Publications: Xie X, Mikkelsen T.S, Gnirke A, Lindblad-Toh K, Kellis M, Lander E.S. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America 104:7145-50 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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