DNA Binding Motif

						

			
Accessions: MA1281.1 (JASPAR 2024), M0243 (AthalianaCistrome v4_May2016)

			
Names: AT5G02460, DOF5.1, AT5G02460.DAP, T22621;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 21
Consensus: aAAAAAGwaAAaaraaaaara
Weblogo: 
PSSM: P0      A      C      G      T
01    217     86    116     96      a
02    355     25     90     45      A
03    412      4     13     86      A
04    512      0      1      2      A
05    505      0      0     10      A
06    464      2     49      0      A
07      2      0    511      2      G
08    150     93     82    190      w
09    306     16     71    122      a
10    369      0    104     42      A
11    354     76     58     27      A
12    320     39     99     57      a
13    328     20     80     87      a
14    225     37    149    104      r
15    261     61     96     97      a
16    329     16    103     67      a
17    349      0     73     93      a
18    345     45    104     21      a
19    260     27    110    118      a
20    275     59    140     41      r
21    263     39    119     94      a
Type: Heterodimer
Binding TFs: Q9LZ56 / T22621 (Dof domain, zinc finger)
Q9LZ56
Binding Sites: MA1281.1.8
MA1281.1.2
MA1281.1.17
MA1281.1.6
MA1281.1.7
MA1281.1.16
MA1281.1.1
MA1281.1.10
MA1281.1.11
MA1281.1.12
MA1281.1.13
MA1281.1.14
MA1281.1.15
MA1281.1.18
MA1281.1.19
MA1281.1.20
MA1281.1.3
MA1281.1.4
MA1281.1.5
MA1281.1.9
			
Publications: Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.