DNA Binding Motif

Accessions: MA1192.1 (JASPAR 2024), M0617 (AthalianaCistrome v4_May2016)
Names: At5g58900, DIV1, At5g58900.DAP, T25235;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: wwwrGATAAGrwwww
Weblogo:
PSSM: P0 A C G T
01 246 27 25 282 w
02 187 65 142 186 w
03 218 47 57 258 w
04 229 7 313 31 r
05 0 0 575 5 G
06 580 0 0 0 A
07 0 0 0 580 T
08 579 0 0 1 A
09 578 0 1 1 A
10 25 53 443 59 G
11 226 36 259 59 r
12 156 62 41 321 w
13 153 55 65 307 w
14 232 53 108 187 w
15 188 63 131 198 w
Binding TFs: T25235 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

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