DNA Binding Motif

Accessions: 5yef_B (3D-footprint 20231221)
Names: Transcriptional repressor CTCF
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of CTCF ZFs2-8-Hs5-1aE
Length: 12
Consensus: CGCCCtCTGcnG
Weblogo:
PSSM: P0 A C G T
01 0 96 0 0 C
02 0 0 96 0 G
03 0 96 0 0 C
04 0 96 0 0 C
05 0 96 0 0 C
06 16 13 13 54 t
07 0 96 0 0 C
08 0 0 0 96 T
09 0 0 96 0 G
10 13 54 16 13 c
11 24 24 24 24 n
12 0 0 96 0 G
Binding TFs: 5yef_B (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc-finger domain)
Binding Sites: 5yef_E
5yef_F
Publications: Yin M, Wang J, Wang M, Li X, Zhang M, Wu Q, Wang Y. Molecular mechanism of directional CTCF recognition of a diverse range of genomic sites. Cell Res 27:1365-1377 (2017). [Pubmed]

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