DNA Binding Motif

						

			
Accessions: MA0929.1 (JASPAR 2024)

			
Names: NCU00019
Organisms: Neurospora crassa
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 12
Consensus: atwGTAAAyAaa
Weblogo: 
PSSM: P0      A      C      G      T
01    326    225    225    225      a
02    225    225    225    326      t
03    320    127    230    323      w
04    150     55    741     55      G
05    111      0      0    889      T
06    803    101      0     96      A
07    999      0      0      0      A
08    898      0      0    101      A
09     26    521     26    428      y
10    923     26     26     26      A
11    438    219    124    219      a
12    413    196    196    196      a
Type: Heterodimer
Binding TFs: Q7RY86 (Fork head domain, FHA domain)
Q7RY86
			
Publications: Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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