DNA Binding Motif

Accessions: MA0266.1 (JASPAR 2018)
Names: ABF2
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2018 1
1 [Pubmed]
Notes: PBM, CSA and/or DIP-chip
Length: 7
Consensus: sTCTAGA
Weblogo:
PSSM: P0 A C G T
01 18 39 25 18 s
02 9 9 2 80 T
03 0 100 0 0 C
04 0 0 0 100 T
05 100 0 0 0 A
06 0 0 100 0 G
07 95 2 2 2 A
Binding TFs: Q02486 (Domain of unknown function (DUF1898), HMG (high mobility group) box)
Publications: Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed]

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