DNA Binding Motif

						

			
Accessions: MA0162.2 (JASPAR 2024)

			
Names: EGR1
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 14
Consensus: sccCCgCCCMCkCc
Weblogo: 
PSSM: P0      A      C      G      T
01   1098   5728   3083   2347      s
02   1506   6847   1359   2544      c
03   1160   6049   2250   2797      c
04   1335  10431      0    490      C
05    233  11574      0    449      C
06   2911      0   6840   2505      g
07      0  12256      0      0      C
08      0  11852      0    404      C
09      0  10154    611   1491      C
10   3652   8361      0    243      M
11      0  11952      0    304      C
12   2368      0   6599   3289      k
13      0   9849   1420    987      C
14   3026   5595   1913   1722      c
Type: Heterodimer
Binding TFs: P18146 (Zinc finger, C2H2 type, Domain of unknown function (DUF3432), Domain of unknown function (DUF3446), Zinc-finger double domain, C2H2-type zinc finger)
P18146
Binding Sites: MA0162.2.1
MA0162.2.10
MA0162.2.11
MA0162.2.12
MA0162.2.13
MA0162.2.14
MA0162.2.15
MA0162.2.16
MA0162.2.17
MA0162.2.18
MA0162.2.19
MA0162.2.2
MA0162.2.20
MA0162.2.3
MA0162.2.4
MA0162.2.5
MA0162.2.6
MA0162.2.7
MA0162.2.8
MA0162.2.9
			
Publications: Meng X, Brodsky M.H, Wolfe S.A. A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors. Nature biotechnology 23:988-94 (2005). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.