DNA Binding Motif
| Accessions: | ArcA (RegulonDB 7.5) |
| Names: | ArcA, ArcA transcriptional dual regulator |
| Organisms: | ECK12 |
| Libraries: | RegulonDB 7.5 1 1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed] |
| Length: | 15 |
| Consensus: | wamawwTwrTTAAma |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 40 7 5 23 w 02 47 5 6 17 a 03 23 30 8 14 m 04 42 7 9 17 a 05 23 14 5 33 w 06 33 1 15 26 w 07 12 5 0 58 T 08 23 14 13 25 w 09 40 0 26 9 r 10 13 3 1 58 T 11 8 6 5 56 T 12 67 1 0 7 A 13 56 9 1 9 A 14 22 49 0 4 m 15 47 16 2 10 a |
| Binding TFs: | ECK120004533 (Response regulator receiver domain, Transcriptional regulatory protein, C terminal) |
| Binding Sites: | ECK120011372 ECK120011435 ECK120011512 ECK120011880 ECK120011964 ECK120011968 ECK120011970 ECK120011972 ECK120011974 ECK120011979 ECK120011981 ECK120011983 ECK120011985 ECK120011987 ECK120011989 ECK120011995 ECK120011997 ECK120011999 ECK120012001 ECK120012003 ECK120012005 ECK120012007 ECK120012009 ECK120012011 ECK120012013 ECK120012016 ECK120012018 ECK120012227 ECK120012229 ECK120012231 ECK120012242 ECK120012244 ECK120012341 ECK120012423 ECK120012425 ECK120012427 ECK120012884 ECK120012994 ECK120012996 ECK120013003 ECK120013005 ECK120013007 ECK120013301 ECK120013303 ECK120013305 ECK120013427 ECK120013452 ECK120013480 ECK120013638 ECK120013699 ECK120013701 ECK120013703 ECK120013705 ECK120013801 ECK120013803 ECK120013815 ECK120013817 ECK120013841 ECK120013860 ECK120013910 ECK120013994 ECK120014123 ECK120014128 ECK120014130 ECK120014132 ECK120014134 ECK120014136 ECK120014138 ECK120014140 ECK120014167 ECK120016996 ECK120016998 ECK120017022 ECK120023168 ECK120023169 ECK120023170 ECK120023171 ECK120030258 ECK120030289 ECK120030291 ECK120030684 ECK120033000 ECK120033004 ECK120051323 ECK120051356 ECK120051359 ECK120051362 ECK125110249 ECK125134663 ECK125141248 |
| Publications: | Wyborn NR., Messenger SL., Henderson RA., Sawers G., Roberts RE., Attwood MM., Green J. Expression of the Escherichia coli yfiD gene responds to intracellular pH and reduces the accumulation of acidic metabolic end products. Microbiology. 148(Pt 4):1015-26 (2002). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.