DNA Binding Motif

						

			
Accessions: MA1248.1 (JASPAR 2024), M0116 (AthalianaCistrome v4_May2016)

			
Names: DREB26, ERF012, DREB26.DAP, T04146;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 20
Consensus: ycwccwycwccdCCACCGmC
Weblogo: 
PSSM: P0      A      C      G      T
01    108    226     85    149      y
02    122    257     65    124      c
03    189    104    132    143      w
04    114    260     77    117      c
05    110    274     66    118      c
06    193     92    134    149      w
07    106    250     69    143      y
08    110    277     52    129      c
09    211     69    136    152      w
10    106    259     71    132      c
11    102    306     51    109      c
12    174     42    143    209      d
13     26    394     50     98      C
14      0    568      0      0      C
15    530      0     36      2      A
16      0    568      0      0      C
17      1    567      0      0      C
18      4      1    563      0      G
19    299    171      0     98      m
20      0    558      0     10      C
Type: Heterodimer
Binding TFs: Q9SFE4 / T04146 (AP2 domain)
Q9SFE4
			
Publications: Medina J, Bargues M, Terol J, Pérez-Alonso M, Salinas J. The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression Is regulated by low temperature but not by abscisic acid or dehydration. Plant Physiol 119:463-70 (1999). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.