DNA Binding Motif

Accessions: AtMYB100_I (AthaMYB 1.0), AtMYB106_I (AthaMYB 1.0), AtMYB109_I (AthaMYB 1.0), AtMYB116_I (AthaMYB 1.0), AtMYB19_I (AthaMYB 1.0), AtMYB1_I (AthaMYB 1.0), AtMYB23_I (AthaMYB 1.0), AtMYB25_I (AthaMYB 1.0), AtMYB31_I (AthaMYB 1.0), AtMYB44_I (AthaMYB 1.0), AtMYB53_I (AthaMYB 1.0), AtMYB62_I (AthaMYB 1.0), AtMYB66_I (AthaMYB 1.0), AtMYB69_I (AthaMYB 1.0), AtMYB70_I (AthaMYB 1.0), AtMYB73_I (AthaMYB 1.0), AtMYB77_I (AthaMYB 1.0), AtMYB78_I (AthaMYB 1.0), AtMYB85_I (AthaMYB 1.0), AtMYB88_I (AthaMYB 1.0)
Organisms: Arabidopsis thaliana
Libraries: AthaMYB 1.0 1
1 Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Length: 8
Consensus: wamaGTTr
Weblogo:
PSSM: P0 A C G T
01 2 0 1 2 w
02 2 1 1 1 a
03 2 3 0 0 m
04 3 0 1 1 a
05 0 0 5 0 G
06 0 0 0 5 T
07 0 0 0 5 T
08 3 0 2 0 r
Type: Heterodimer
Binding TFs: AtMYB1 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB100 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB106 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB109 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB116 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB19 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB23 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB25 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB31 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB44 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB53 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB62 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB66 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB69 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB70 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB73 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB77 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB78 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB85 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
AtMYB88 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Binding Sites: AAAAGTTA
ACAAGTTA
GTCAGTTA
TACTGTTG
TGCGGTTG
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.