DNA Binding Motif

						

			
Accessions: DnaA (RegulonDB 7.5)

			
Names: chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator, DnaA
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 11
Consensus: AkTTATCCACA
Weblogo: 
PSSM: P0      A      C      G      T
01      8      1      0      2      A
02      2      1      4      4      k
03      2      0      0      9      T
04      0      0      0     11      T
05     10      0      0      1      A
06      1      0      0     10      T
07      0      8      1      2      C
08      1     10      0      0      C
09     10      0      0      1      A
10      0     11      0      0      C
11     10      0      0      1      A
Binding TFs: ECK120004705 (ATPase family associated with various cellular activities (AAA), Bacterial dnaA  protein, IstB-like ATP binding protein, Bacterial dnaA protein helix-turn-helix, DnaA N-terminal domain)
Binding Sites: ECK120011906
ECK120012826
ECK120012828
ECK120012945
ECK120013381
ECK120013942
ECK120014050
ECK120014073
ECK120051326
ECK120051328
ECK125110185
			
	
			


			

				

				
				
				
				

			

			

		

	
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