DNA Binding Motif

Accessions: 4jqd_AB (3D-footprint 20231221)
Names: Csp231I C protein
Organisms: Citrobacter sp. RFL231
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OL operator complex
Length: 15
Consensus: CTAAGtnnncCTTAG
Weblogo:
PSSM: P0 A C G T
01 0 89 0 7 C
02 9 6 4 77 T
03 96 0 0 0 A
04 96 0 0 0 A
05 3 7 74 12 G
06 11 12 12 61 t
07 24 24 24 24 n
08 24 24 24 24 n
09 24 24 24 24 n
10 12 61 12 11 c
11 9 69 9 9 C
12 0 0 0 96 T
13 0 0 0 96 T
14 90 3 3 0 A
15 0 0 96 0 G
Binding TFs: 4jqd_A / 4jqd_B (Helix-turn-helix, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: 4jqd_G
4jqd_H
Publications: Shevtsov M.B, Streeter S.D, Thresh S.J, Swiderska A, McGeehan J.E, Kneale G.G. Structural analysis of DNA binding by C.Csp231I, a member of a novel class of R-M controller proteins regulating gene expression. Acta crystallographica. Section D, Biological crystallography 71:398-407 (2015). [Pubmed]

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