DNA Binding Motif

Accessions: 1f5t_A (3D-footprint 20231221)
Names: DIPHTHERIA TOXIN REPRESSOR
Organisms: Corynebacterium diphtheriae, strain ATCC 700971 / NCTC 13129 / Biotype gravis
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: DIPHTHERIA TOX REPRESSOR (C102D MUTANT) COMPLEXED WITH NICKEL AND DTXR CONSENSUS BINDING SEQUENCE
Length: 4
Consensus: GGCT
Weblogo:
PSSM: P0 A C G T
01 9 9 69 9 G
02 0 0 96 0 G
03 9 69 9 9 C
04 9 9 9 69 T
Binding TFs: 1f5t_A (Iron dependent repressor, N-terminal DNA binding domain, Iron dependent repressor, metal binding and dimerisation domain)
Binding Sites: 1f5t_E
1f5t_F
Publications: Chen C.S, White A, Love J, Murphy J.R, Ringe D. Methyl groups of thymine bases are important for nucleic acid recognition by DtxR. Biochemistry 39:10397-407 (2000). [Pubmed]

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