DNA Binding Motif

Accessions: 2ayg_A (3D-footprint 20231221)
Names: Regulatory protein E2
Organisms: Human papillomavirus type 6a
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of HPV6a E2 DNA binding domain bound to an 18 base pair DNA target
Length: 6
Consensus: CGGTTG
Weblogo:
PSSM: P0 A C G T
01 7 73 7 9 C
02 0 0 96 0 G
03 0 0 96 0 G
04 7 7 7 75 T
05 9 7 7 73 T
06 9 7 73 7 G
Binding TFs: 2ayg_A (E2 (early) protein, C terminal)
Binding Sites: 2ayg_C / 2ayg_D
Publications: Hooley E, Fairweather V, Clarke A.R, Gaston K, Brady R.L. The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein. Nucleic acids research 34:3897-908 (2006). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.