DNA Binding Motif
| Accessions: | MA1272.1 (JASPAR 2024), M0248 (AthalianaCistrome v4_May2016) |
| Names: | AT2G28810, DOF2.2, AT2G28810.DAP, T09933; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 21 |
| Consensus: | ttyttttttttTwaCTTTTTb |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 104 112 70 314 t 02 105 129 61 305 t 03 119 174 50 257 y 04 87 128 35 350 t 05 97 113 39 351 t 06 100 103 39 358 t 07 116 124 72 288 t 08 113 110 60 317 t 09 85 127 43 345 t 10 110 66 58 366 t 11 83 66 62 389 t 12 30 132 19 419 T 13 192 95 42 271 w 14 270 110 128 92 a 15 0 600 0 0 C 16 0 0 0 600 T 17 0 0 0 600 T 18 0 0 0 600 T 19 130 15 0 455 T 20 59 45 66 430 T 21 89 157 151 203 b |
| Type: | Heterodimer |
| Binding TFs: | Q9ZV33 / T09933 (Dof domain, zinc finger) Q9ZV33 |
| Binding Sites: | MA1272.1.1 MA1272.1.10 MA1272.1.11 MA1272.1.12 MA1272.1.13 MA1272.1.14 MA1272.1.15 MA1272.1.16 MA1272.1.17 MA1272.1.18 MA1272.1.19 MA1272.1.2 MA1272.1.20 MA1272.1.3 MA1272.1.4 MA1272.1.5 MA1272.1.6 MA1272.1.7 MA1272.1.8 MA1272.1.9 |
| Publications: | Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
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